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| -rw-r--r-- | Code/buildRmatrix.py | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/Code/buildRmatrix.py b/Code/buildRmatrix.py index bb5fdfb..a4f4af7 100644 --- a/Code/buildRmatrix.py +++ b/Code/buildRmatrix.py @@ -7,6 +7,7 @@ # Last modified 5 Apr 2017, hui, slcu
# Last modified 25 Oct 2019, hui, zjnu [Comments; add a variable WARN_NA to turn on/off print NA warnings.]
# Last modified 10 Oct 2020, hui, zjnu [note that if there are more than 1000 RNA-seq samples, this script requires at least 7GB memory to run.]
+# TODO: this version is too slow. For example, making a TPM.txt with 5178 columns will take at least 12 hours. Should speed this up by using more memory (e.g., 12 GB), not a big deal nowadays.
import os, sys, glob
from configure import TPM_FILE
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